library(bigMap)
source('~/bigMap/bdm_xtrs.R')
bdm.mybdm('~/omics/10xmouse/umap')
## [1] "~/omics/10xmouse/umap/"
k-ary neighbourhood preservation
omics.kn.plot(list(m.50, m.100, m.200, m.400, m.800, m.1600))
Running times
m.list <- list(m.50, m.100, m.200, m.400, m.800, m.1600)
r.times <- sapply(m.list, function(m) round(unlist(m$t) /60, 0))
r.times <- rbind(r.times, apply(r.times, 2, sum))
rownames(r.times) <- c('betas', 'ptsne', 'total')
colnames(r.times) <- sapply(m.list, function(m) m$Xbeta$ppx)
knitr::kable(r.times, caption = 'Computation times (min)') %>%
kable_styling(full_width = F)
Computation times (min)
|
|
50
|
100
|
200
|
400
|
800
|
1600
|
|
betas
|
0
|
0
|
0
|
0
|
0
|
0
|
|
ptsne
|
5
|
6
|
7
|
11
|
18
|
38
|
|
total
|
5
|
6
|
7
|
11
|
18
|
38
|
Discussion
